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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6521889_6522433_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6521889 - 6522433
Intron Length:
545

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTTCG
5'SS Class:
strong_major
3'SS Sequence:
CTCTTTCTTGCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAC
U12 Branch Point Sequence:
CATCTTTTAACT
Flanking Amino Acid:
HPECPKLYQEYFRMELMNAE
Intron Amino Acid Position:
182

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
90.5
0.96
0.8
77.5
33.5
Major BPS
89.7
0.98
0.7
89.9
20
Major PPT
88.6
0.87
0.7
84
24.1
Minor 5ss
35.1
-1.7
2.7
41.3
45.2
Minor BPS
69.3
0.68
1.2
77.92
38.5

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704