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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6522512_6522967_F

Intron Information:

Intron Rank:
8
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6522512 - 6522967
Intron Length:
456

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTGGGTCCC
5'SS Class:
major
3'SS Sequence:
CTTGATATTGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
TTTTTTTCAACA
Flanking Amino Acid:
KEFEQAKMDLGEFNYSEEIL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
71.8
0.51
1
58.5
40.7
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
76.9
0.61
0.9
70
39.8
Minor 5ss
28.8
-2.4
3
32.9
35.8
Minor BPS
72.9
0.71
1.4
83
31.4

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704