Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6523050_6524275_F

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

6523050 - 6524275

Intron Length:

1226

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

AAG|GTGATTTAA

5'SS Class:

strong_major

3'SS Sequence:

TCTTGATTTATAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCTTGAT

U12 Branch Point Sequence:

CCCCTCTTGATT

Flanking Amino Acid:

IYRDAAQKIKGVEFHLAVLS

Intron Amino Acid Position:

235

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.5

0.77

0.9

78.2

26.1

Major BPS

83.8

0.84

73.6

41.8

Major PPT

78.9

0.65

0.8

36.4

Minor 5ss

34.1

-1.8

2.8

40.5

45.7

Minor BPS

55.5

0.25

1.3

63.11

42.1

Associated Gene:

Gene:

UTP6

Ensembl Gene ID:

ENSAPLG00000005821

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000006098

6518369 - 6530072

11704