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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6527062_6527859_F

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6527062 - 6527859
Intron Length:
798

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTCTGTGCT
5'SS Class:
major
3'SS Sequence:
GCTTACCTTGTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAT
U12 Branch Point Sequence:
TTCTAATCAATT
Flanking Amino Acid:
EEAFKHLKSKGTLPLWTLWV
Intron Amino Acid Position:
436

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.5
0.55
1.3
71.5
38.6
Major BPS
94.5
1.11
0.6
92.2
14.6
Major PPT
73
0.52
0.9
66.3
35.4
Minor 5ss
36.8
-1.5
3.1
50.8
45.6
Minor BPS
50.4
0.09
2
74.58
42.1

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704