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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6528829_6528911_F

Intron Information:

Intron Rank:
16
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6528829 - 6528911
Intron Length:
83

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAACAAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTGCTTTAG|C
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTTTAAA
U12 Branch Point Sequence:
TTAAAGTTATTT
Flanking Amino Acid:
GYKKVKRVFTSLHENRPLSL
Intron Amino Acid Position:
499

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.3
0.69
1.1
76.9
33.7
Major BPS
72.6
0.56
1.2
75.9
36.3
Major PPT
86
0.81
0.7
85.6
29.2
Minor 5ss
38.3
-1.3
2.9
48.8
46.9
Minor BPS
44.2
-0.3
2.3
66.57
44

Associated Gene:

Gene:
UTP6
Ensembl Gene ID:
ENSAPLG00000005821
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000006098
6518369 - 6530072
11704