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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6532899_6534934_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6532899 - 6534934
Intron Length:
2036

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ATG|GTGAGTACA
5'SS Class:
strong_major
3'SS Sequence:
CTTTCATCTTTAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTCTTTCATC
Flanking Amino Acid:
ELEESESNPYDAGDLYCGSF
Intron Amino Acid Position:
34

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85
0.82
0.8
78.5
30.1
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
80.3
0.68
0.7
78.3
29.2
Minor 5ss
30.7
-2.2
2.5
31.6
35.9
Minor BPS
70.8
0.64
1.7
81.67
33.1

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000017131
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000031718
6532799 - 6535104
2306