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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6863895_6865483_R

Intron Information:

Intron Rank:
11
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6863895 - 6865483
Intron Length:
1589

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTAAGTAAG
5'SS Class:
strong_major
3'SS Sequence:
TATCTCTTAACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TATCTCTTAACA
Flanking Amino Acid:
GQLDLIVDTMGQEAWIRKLK
Intron Amino Acid Position:
370

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
86.7
0.87
0.9
77.9
38.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
78
0.63
0.9
73.7
35.3
Minor 5ss
34.6
-1.7
2.7
34.2
41.4
Minor BPS
79
0.9
1.1
82.05
32.1

Associated Gene:

Gene:
SCPEP1
Ensembl Gene ID:
ENSAPLG00000005127
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005326
6863542 - 6873844
10303