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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6865622_6866270_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
6865622 - 6866270
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTACTTTCC
5'SS Class:
major
3'SS Sequence:
TGTTTCTAACTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTAAAAT
U12 Branch Point Sequence:
CTGTTTCTAACT
Flanking Amino Acid:
KIIPDCVKWGGQSTNVFENM
Intron Amino Acid Position:
324

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.8
0.61
1.1
68.8
37
Major BPS
70.6
0.51
1.1
75.9
34.4
Major PPT
69.4
0.44
1
64.2
41.8
Minor 5ss
40.5
-1.1
2.9
54.3
42.8
Minor BPS
59.5
0.38
1.7
75.52
41.8

Associated Gene:

Gene:
SCPEP1
Ensembl Gene ID:
ENSAPLG00000005127
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005326
6863542 - 6873844
10303