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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6868901_6869074_R

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6868901 - 6869074
Intron Length:
174

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACC|GTAAGTACC
5'SS Class:
major
3'SS Sequence:
ATTTCTCTTCTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTATAAT
U12 Branch Point Sequence:
TTATAATTAAAG
Flanking Amino Acid:
LSWGPYLYSTSLLDDHGLAE
Intron Amino Acid Position:
215

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
70.6
0.49
1.3
70.1
40.6
Major BPS
87.8
0.94
0.9
86.6
28.1
Major PPT
82.1
0.72
0.8
74.5
35.7
Minor 5ss
38.9
-1.3
2.7
51.9
37.5
Minor BPS
52.7
-0
2
64.49
42.3

Associated Gene:

Gene:
SCPEP1
Ensembl Gene ID:
ENSAPLG00000005127
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005326
6863542 - 6873844
10303