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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6870408_6870883_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6870408 - 6870883
Intron Length:
476

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTGAT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
GTCTAAT
U12 Branch Point Sequence:
CTCTGTCTAATG
Flanking Amino Acid:
DFFTHRTEFQTIPFYIFSES
Intron Amino Acid Position:
153

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.3
1.11
0.7
90.5
20.5
Major BPS
76.7
0.66
1.2
77.9
34.9
Major PPT
88.8
0.87
0.6
81.4
30.7
Minor 5ss
34.4
-1.8
3.3
48.7
47.5
Minor BPS
45.2
-0.5
2.1
50.83
44.5

Associated Gene:

Gene:
SCPEP1
Ensembl Gene ID:
ENSAPLG00000005127
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005326
6863542 - 6873844
10303