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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6871040_6871941_R

Intron Information:

Intron Rank:
3
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
6871040 - 6871941
Intron Length:
902

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTATAGTGG
5'SS Class:
weak_major
3'SS Sequence:
TCCACTTGTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTCAT
U12 Branch Point Sequence:
TTGCTTTCCACT
Flanking Amino Acid:
KEMKPRNTTWLQAASILFVD
Intron Amino Acid Position:
101

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
60.6
0.25
1.1
47.3
43.6
Major BPS
86.1
0.9
0.7
85.7
22.9
Major PPT
73.2
0.52
1
67.4
37.8
Minor 5ss
41.1
-1
3.2
46.4
49
Minor BPS
47.3
-0.1
1.9
68.75
42.6

Associated Gene:

Gene:
SCPEP1
Ensembl Gene ID:
ENSAPLG00000005127
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000005326
6863542 - 6873844
10303