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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6883490_6884337_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6883490 - 6884337
Intron Length:
848

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGCGGG
5'SS Class:
strong_major
3'SS Sequence:
TCCTCTACTACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTAAA
U12 Branch Point Sequence:
TTTTTCTAAAAT
Flanking Amino Acid:
PLQQAKAEAESALKKKLTEL
Intron Amino Acid Position:
208

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.2
0.76
0.9
63.1
43.4
Major BPS
85.3
0.88
0.8
84.2
21.8
Major PPT
79.1
0.65
0.8
72.9
30.5
Minor 5ss
30.3
-2.3
3.3
37.8
47.1
Minor BPS
69.5
0.69
1.7
88.72
36.1

Associated Gene:

Gene:
TRIM25
Ensembl Gene ID:
ENSAPLG00000019496
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024381
6882869 - 6892209
9341
ENSAPLT00000037520
6882869 - 6892209
9341
ENSAPLT00000031341
6882869 - 6892209
9341