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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6885659_6886202_F

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6885659 - 6886202
Intron Length:
544

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCATTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
CATTTCTCATTT
Flanking Amino Acid:
TEHDDVLFLKRAAALQRAST
Intron Amino Acid Position:
318

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82
0.76
1
77.4
37.4
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
87.9
0.85
0.7
85.8
27
Minor 5ss
35.3
-1.7
3
50
45.8
Minor BPS
50.3
0.09
1.8
68.67
42.7

Associated Gene:

Gene:
TRIM25
Ensembl Gene ID:
ENSAPLG00000019496
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037520
6882869 - 6892209
9341
ENSAPLT00000031341
6882869 - 6892209
9341
ENSAPLT00000024381
6882869 - 6892209
9341