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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6914027_6914871_R

Intron Information:

Intron Rank:
9
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6914027 - 6914871
Intron Length:
845

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGCAAT
5'SS Class:
strong_major
3'SS Sequence:
TCTTAATTCATAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GCTTTCTTAATT
Flanking Amino Acid:
GMGDEPYPLARHDDGLLEVV
Intron Amino Acid Position:
471

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.9
0.8
0.9
79.7
35.4
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
74.7
0.55
0.8
69.2
35.7
Minor 5ss
47.1
-0.3
2.6
65.5
45.8
Minor BPS
78
0.96
1.1
83.97
37.3

Associated Gene:

Gene:
DGKE
Ensembl Gene ID:
ENSAPLG00000004745
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026069
6906230 - 6923257
17028
ENSAPLT00000024038
6912406 - 6923257
10852
ENSAPLT00000004901
6906230 - 6922481
16252