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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6916153_6916289_R

Intron Information:

Intron Rank:
6
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6916153 - 6916289
Intron Length:
137

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTATGGCTT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCTCTTACAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TTCTCTCTTACA
Flanking Amino Acid:
KGYYNLRKPKVFTMNNYFSI
Intron Amino Acid Position:
367

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
82.8
0.77
1
75.1
40.7
Major BPS
80
0.75
1
78.6
31
Major PPT
88.9
0.88
0.6
83.7
24.6
Minor 5ss
42.8
-0.8
3.4
64.4
47
Minor BPS
55
0.15
2
71.9
40.1

Associated Gene:

Gene:
DGKE
Ensembl Gene ID:
ENSAPLG00000004745
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026069
6906230 - 6923257
17028
ENSAPLT00000024038
6912406 - 6923257
10852
ENSAPLT00000004901
6906230 - 6922481
16252