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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6916342_6916615_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
6916342 - 6916615
Intron Length:
274

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TGTTGTTTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AAATAAT
U12 Branch Point Sequence:
TGCATCTAAATA
Flanking Amino Acid:
VMEADGIKLDRWKVQVTNKG
Intron Amino Acid Position:
349

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.4
1.12
0.6
90.5
20.4
Major BPS
71.2
0.53
1
70.3
31.9
Major PPT
87
0.83
0.8
84.6
36
Minor 5ss
36
-1.6
2.7
44.9
43.2
Minor BPS
50.8
0.02
1.7
59.9
40.6

Associated Gene:

Gene:
DGKE
Ensembl Gene ID:
ENSAPLG00000004745
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026069
6906230 - 6923257
17028
ENSAPLT00000024038
6912406 - 6923257
10852
ENSAPLT00000004901
6906230 - 6922481
16252