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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6919860_6920199_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
6919860 - 6920199
Intron Length:
340

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAATTGCC
5'SS Class:
strong_major
3'SS Sequence:
CATCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCAAAC
U12 Branch Point Sequence:
TGTTATGTGACT
Flanking Amino Acid:
RKDKRTDYEKIVPYGRKHWI
Intron Amino Acid Position:
209

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.8
0.82
0.9
75.1
33.1
Major BPS
67.4
0.43
1
73.2
28.9
Major PPT
85.4
0.8
0.8
80.2
31.4
Minor 5ss
34
-1.8
3.1
45.2
42.8
Minor BPS
49.9
0.07
2.2
76.66
40.1

Associated Gene:

Gene:
DGKE
Ensembl Gene ID:
ENSAPLG00000004745
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000026069
6906230 - 6923257
17028
ENSAPLT00000024038
6912406 - 6923257
10852
ENSAPLT00000004901
6906230 - 6922481
16252