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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_6929274_6930883_F

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
3UTR
Intron Coordinates:
6929274 - 6930883
Intron Length:
1610

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTG|GTATATAAA
5'SS Class:
major
3'SS Sequence:
TTTTTTTCTGCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTAGTTATAT
Flanking Amino Acid:
3UTR
Intron Amino Acid Position:
3UTR

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
72.5
0.53
1
71
34
Major BPS
100
1.24
0.5
100
0
Major PPT
96
1.03
0.5
92.7
17.1
Minor 5ss
40.6
-1
2.7
47.2
43.7
Minor BPS
48
-0
2.5
78.32
43.5

Associated Gene:

Gene:
C17orf67
Ensembl Gene ID:
ENSAPLG00000022833
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000030105
6925027 - 6931122
6096