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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7031940_7034136_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7031940 - 7034136
Intron Length:
2197

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GTG|GTACGAGAA
5'SS Class:
major
3'SS Sequence:
GTTCTTTTTGCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTAAT
U12 Branch Point Sequence:
GTCTTCTTAATG
Flanking Amino Acid:
ARSQRRKAVSDSQPCSDEEG
Intron Amino Acid Position:
155

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.8
0.56
1
64.2
35.8
Major BPS
87
0.92
0.9
86.2
29.1
Major PPT
89
0.88
0.7
84.2
30.7
Minor 5ss
28.8
-2.4
3.5
34.7
43.7
Minor BPS
70.5
0.51
1.3
67.31
41

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004739
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004872
7031143 - 7037732
6590