About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7034354_7037486_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7034354 - 7037486
Intron Length:
3133

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAATAGTC
5'SS Class:
strong_major
3'SS Sequence:
TTTTCCTCAAAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TTTTCCTCAAAA
Flanking Amino Acid:
RHQQVIDYIQQIDDIWREMR
Intron Amino Acid Position:
83

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
81.7
0.75
1
75.2
32.9
Major BPS
100
1.24
0.5
100
0
Major PPT
70.2
0.46
1
72.7
31.1
Minor 5ss
35.1
-1.7
3.5
50.5
46.1
Minor BPS
74.5
0.77
1.6
85.51
33.3

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000004739
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004872
7031143 - 7037732
6590