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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7090687_7093612_R

Intron Information:

Intron Rank:
144813
Intron Class:
major
Intron Phase:
Intron Coordinates:
7090687 - 7093612
Intron Length:
2926

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTAAGTCAA
5'SS Class:
strong_major
3'SS Sequence:
TTTTTGTCTACAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTAAC
U12 Branch Point Sequence:
ATAATATTAACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.3
0.88
0.9
75.9
35.2
Major BPS
81.9
0.79
0.8
81.9
25
Major PPT
89.5
0.89
0.7
84.3
30.8
Minor 5ss
33.7
-1.9
2.9
38
41
Minor BPS
61.9
0.45
1.6
77.39
38.2

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000025286
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024082
7090522 - 7094577
4056