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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7192093_7192565_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7192093 - 7192565
Intron Length:
473

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGTAAA
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTACAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
ATTACAT
U12 Branch Point Sequence:
TTTCTCTTTACA
Flanking Amino Acid:
PSWLVNWAAKSGVPAFLKDM
Intron Amino Acid Position:
194

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
97.9
1.13
0.6
92.3
16.1
Major BPS
73.9
0.59
1
81
30.2
Major PPT
92.5
0.96
0.6
87.6
22.6
Minor 5ss
35
-1.7
2.7
41.8
44.8
Minor BPS
69.4
0.6
1.6
80.69
34.2

Associated Gene:

Gene:
PCTP
Ensembl Gene ID:
ENSAPLG00000004610
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004744
7192027 - 7200932
8906