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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7192634_7193301_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7192634 - 7193301
Intron Length:
668

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGAAGT
5'SS Class:
strong_major
3'SS Sequence:
TTCTCATCTCCAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTCTCAT
U12 Branch Point Sequence:
TCTTTCTCATCT
Flanking Amino Acid:
IESDGKTGSKVYMYYFDNPG
Intron Amino Acid Position:
171

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
92.3
1
0.8
84.6
33.3
Major BPS
94.9
1.12
0.6
93.9
14.7
Major PPT
82.3
0.73
0.8
73.9
35.7
Minor 5ss
35.2
-1.7
3
49.5
46.3
Minor BPS
60.1
0.4
1.8
79.56
42.7

Associated Gene:

Gene:
PCTP
Ensembl Gene ID:
ENSAPLG00000004610
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004744
7192027 - 7200932
8906