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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7193889_7197467_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7193889 - 7197467
Intron Length:
3579

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAGCTGA
5'SS Class:
strong_major
3'SS Sequence:
TTTTCAACTGTAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAA
U12 Branch Point Sequence:
CCTTTTTCAACT
Flanking Amino Acid:
FRKQWDQYVKELYEKTYNGE
Intron Amino Acid Position:
87

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
88.8
0.91
0.9
75
38.1
Major BPS
90.8
1.01
0.7
91.9
19.6
Major PPT
77.4
0.62
0.8
72.1
32.7
Minor 5ss
43.2
-0.7
2.9
56.2
47.9
Minor BPS
62.2
0.46
1.6
74.97
42.5

Associated Gene:

Gene:
PCTP
Ensembl Gene ID:
ENSAPLG00000004610
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004744
7192027 - 7200932
8906