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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7326581_7329687_R

Intron Information:

Intron Rank:
4
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7326581 - 7329687
Intron Length:
3107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTAAATTGG
5'SS Class:
strong_major
3'SS Sequence:
GTTTAATGAGCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATCTAAT
U12 Branch Point Sequence:
AATATCTTATTT
Flanking Amino Acid:
RKVFIPDDLKDDKYWARRRK
Intron Amino Acid Position:
321

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.6
0.82
0.9
72.1
40.4
Major BPS
85.7
0.89
0.8
84
22.2
Major PPT
64.5
0.33
1.1
59.8
44.8
Minor 5ss
38.9
-1.2
2.9
49.7
46.6
Minor BPS
57.5
0.31
1.6
71.99
39

Associated Gene:

Gene:
HLF
Ensembl Gene ID:
ENSAPLG00000004386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004494
7326365 - 7358541
32177