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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7356979_7357963_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7356979 - 7357963
Intron Length:
985

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACG|GTGAGGCTT
5'SS Class:
major
3'SS Sequence:
TGTTTTGTTTAAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TATTTATTATGT
Flanking Amino Acid:
PLKLPLAHDDAFGKEKDKEK
Intron Amino Acid Position:
135

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
77.4
0.65
1
69.9
42.1
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
75
0.56
1.1
79.2
38.4
Minor 5ss
31.7
-2.1
3.5
48.3
47.3
Minor BPS
49.2
0.02
2.1
73.84
42.9

Associated Gene:

Gene:
HLF
Ensembl Gene ID:
ENSAPLG00000004386
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004494
7326365 - 7358541
32177