Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7378905_7393623_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7378905 - 7393623

Intron Length:

14719

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAA|GTGAGTATT

5'SS Class:

strong_major

3'SS Sequence:

GGTTCTTTTCTAG|C

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TCCTAAT

U12 Branch Point Sequence:

GGGTTCCTAATA

Flanking Amino Acid:

YTADGIKYFINHVTQTTSWI

Intron Amino Acid Position:

687

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

85.5

0.84

0.8

89.7

22.3

Major BPS

81.9

0.79

0.9

80.1

Major PPT

77.8

0.63

0.9

69.7

41.5

Minor 5ss

37.9

-1.4

51.7

39.1

Minor BPS

53.4

0.1

1.7

61.21

38.9

Associated Gene:

Gene:

STXBP4

Ensembl Gene ID:

ENSAPLG00000004179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024023

7378793 - 7443644

64852

ENSAPLT00000004300

7378793 - 7447699

68907