Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7423879_7424564_R

Intron Information:

Intron Rank:

Intron Class:

major

Intron Phase:

Intron Coordinates:

7423879 - 7424564

Intron Length:

686

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

CAG|GTAAAGTAT

5'SS Class:

strong_major

3'SS Sequence:

TTTAATTATGCAG|T

3'SS Class:

major_PPT

U2 Branch Point Sequence:

ATTTAAT

U12 Branch Point Sequence:

GCCTATTTAATT

Flanking Amino Acid:

NDIAGLLNSQFVTCGSLEDD

Intron Amino Acid Position:

460

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

82.3

0.76

0.9

32.3

Major BPS

90.7

1.01

0.7

19.9

Major PPT

79.2

0.66

40.2

Minor 5ss

37.8

-1.4

3.5

49.2

Minor BPS

59.7

0.38

1.5

68.98

42.6

Associated Gene:

Gene:

STXBP4

Ensembl Gene ID:

ENSAPLG00000004179

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000024023

7378793 - 7443644

64852

ENSAPLT00000004300

7378793 - 7447699

68907