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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7440351_7443497_R

Intron Information:

Intron Rank:
1
Intron Class:
major-like
Intron Phase:
2
Intron Coordinates:
7440351 - 7443497
Intron Length:
3147

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CTG|GTATGCTTA
5'SS Class:
weak_major
3'SS Sequence:
TTTTATTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
ERFDGLSLLYWTIMGPHGIN
Intron Amino Acid Position:
23

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.5
0.6
1
69.4
37.6
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.7
81.1
30.5
Minor 5ss
62.8
0.43
2.3
69.7
43.2
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
STXBP4
Ensembl Gene ID:
ENSAPLG00000004179
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000024023
7378793 - 7443644
64852