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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7440351_7447586_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7440351 - 7447586
Intron Length:
7236

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTATTTCGTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTTAT
U12 Branch Point Sequence:
TTTATTTTATTT
Flanking Amino Acid:
STDPLTNLNKKTIMGPHGIN
Intron Amino Acid Position:
13

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87.8
0.89
0.9
87.3
26.9
Major BPS
96.5
1.15
0.6
86
34.2
Major PPT
84.2
0.77
0.7
81.1
30.5
Minor 5ss
40.1
-1.1
2.8
53.2
37.3
Minor BPS
61.8
0.45
1.6
79.69
37

Associated Gene:

Gene:
STXBP4
Ensembl Gene ID:
ENSAPLG00000004179
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000004300
7378793 - 7447699
68907