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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7449487_7449567_F

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7449487 - 7449567
Intron Length:
81

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACCGGGG
5'SS Class:
major
3'SS Sequence:
TGCCTTTGCCCAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GGCTGAG
U12 Branch Point Sequence:
TTTGCCTTTGCC
Flanking Amino Acid:
AVPLYRLYCQATGLGGTTGA
Intron Amino Acid Position:
104

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
63.7
0.32
1.3
49.8
46.9
Major BPS
43.9
-0.3
1.6
36.8
44.4
Major PPT
71.3
0.48
1
64.3
41.4
Minor 5ss
33.1
-1.9
3.7
46.9
48.5
Minor BPS
44.8
-0.4
3.7
74.54
42.5

Associated Gene:

Gene:
COX11
Ensembl Gene ID:
ENSAPLG00000019353
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034038
7449178 - 7451084
1907