About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7454625_7455401_R

Intron Information:

Intron Rank:
14
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
7454625 - 7455401
Intron Length:
777

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGA|GTAAGTAGC
5'SS Class:
major
3'SS Sequence:
GTTCTTCTTTCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
CTGTGAT
U12 Branch Point Sequence:
AAAACTGTGATG
Flanking Amino Acid:
IMEFDPLAPTEAIYEEIDVT
Intron Amino Acid Position:
451

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76
0.61
1.1
69.9
41.1
Major BPS
68.9
0.47
1.2
60.7
45.9
Major PPT
87.3
0.84
0.7
84.9
30
Minor 5ss
37.4
-1.4
2.7
42.4
38.3
Minor BPS
42.4
-0.7
1.9
42.42
36.6

Associated Gene:

Gene:
TOM1L1
Ensembl Gene ID:
ENSAPLG00000003778
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003879
7454558 - 7477573
23016