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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7457308_7458164_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7457308 - 7458164
Intron Length:
857

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TTA|GTAAGTGAT
5'SS Class:
major
3'SS Sequence:
CTTTGAATTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TAATAAT
U12 Branch Point Sequence:
TAATGTTTAAAC
Flanking Amino Acid:
DSAASQSSGLNCISAHPEDA
Intron Amino Acid Position:
345

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79.2
0.69
1
76.9
31.6
Major BPS
80
0.75
1
78.6
31
Major PPT
78.6
0.64
0.9
74.6
39
Minor 5ss
36.2
-1.6
3.3
50.7
41.2
Minor BPS
55.4
0.15
1.8
65.7
39.6

Associated Gene:

Gene:
TOM1L1
Ensembl Gene ID:
ENSAPLG00000003778
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003879
7454558 - 7477573
23016