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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7458286_7459602_R

Intron Information:

Intron Rank:
9
Intron Class:
major-like
Intron Phase:
0
Intron Coordinates:
7458286 - 7459602
Intron Length:
1317

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
GAG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTAAATGCTAAG|C
3'SS Class:
degenerate_major
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCCTTTTTAAAT
Flanking Amino Acid:
NQRIQREREELYRKQPSAPS
Intron Amino Acid Position:
305

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
93.1
1.02
0.7
86.6
22.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
57.6
0.17
1.2
61
43.7
Minor 5ss
30.6
-2.2
2.6
35.8
41.1
Minor BPS
59.4
0.37
1.4
67.62
43.9

Associated Gene:

Gene:
TOM1L1
Ensembl Gene ID:
ENSAPLG00000003778
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003879
7454558 - 7477573
23016