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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7466902_7468743_R

Intron Information:

Intron Rank:
5
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7466902 - 7468743
Intron Length:
1842

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAG|GTGGGGATA
5'SS Class:
major
3'SS Sequence:
TGTCTGTTAACAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTAAA
U12 Branch Point Sequence:
TGTCTGTTAACA
Flanking Amino Acid:
SADTSTGGPKSSSQHPTKSS
Intron Amino Acid Position:
165

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
37
Major BPS
75.2
0.63
1.1
75.9
36.3
Major PPT
74.2
0.54
1
69.2
40.7
Minor 5ss
29
-2.4
3.4
38.5
46.8
Minor BPS
58.9
0.28
2.1
73.25
38.4

Associated Gene:

Gene:
TOM1L1
Ensembl Gene ID:
ENSAPLG00000003778
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003879
7454558 - 7477573
23016