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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7469469_7475029_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
0
Intron Coordinates:
7469469 - 7475029
Intron Length:
5561

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCT|GTAAGTACA
5'SS Class:
major
3'SS Sequence:
TTTGTATGCACAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TGTTCAT
U12 Branch Point Sequence:
ATCTTTGTAACA
Flanking Amino Acid:
NHKEIRLTLSLLDMCVQNCG
Intron Amino Acid Position:
75

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
75.9
0.61
1.1
74
36.3
Major BPS
84.8
0.86
1
85.7
34.9
Major PPT
74.1
0.54
1
69
41
Minor 5ss
38.9
-1.2
2.7
53.8
42.8
Minor BPS
55.2
0.16
2
68.42
38.7

Associated Gene:

Gene:
TOM1L1
Ensembl Gene ID:
ENSAPLG00000003778
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003879
7454558 - 7477573
23016