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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7477394_7477515_R

Intron Information:

Intron Rank:
1
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
7477394 - 7477515
Intron Length:
122

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TCG|GTGAGTAGT
5'SS Class:
strong_major
3'SS Sequence:
CTCGGCCTTTCAG|A
3'SS Class:
major_PPT
U2 Branch Point Sequence:
GCCTGAA
U12 Branch Point Sequence:
CCCGCCTGAACC
Flanking Amino Acid:
PFGTAVGSLIERATFGALQT
Intron Amino Acid Position:
20

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.7
0.79
0.9
78.2
37.9
Major BPS
51.8
0.05
1.2
45.3
39.8
Major PPT
73.8
0.54
0.9
69
37.1
Minor 5ss
32.5
-2
2.8
43.2
43.8
Minor BPS
54.4
0.12
1.7
58.45
46.5

Associated Gene:

Gene:
TOM1L1
Ensembl Gene ID:
ENSAPLG00000003778
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003879
7454558 - 7477573
23016