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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7550498_7553241_R

Intron Information:

Intron Rank:
147248
Intron Class:
major
Intron Phase:
Intron Coordinates:
7550498 - 7553241
Intron Length:
2744

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTAAATAGG
5'SS Class:
strong_major
3'SS Sequence:
AATATTCTTCCAG|T
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ATATGAT
U12 Branch Point Sequence:
TGATGGTTAAAA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
85.4
0.83
0.9
75.1
41.1
Major BPS
75.8
0.64
1
65.8
41
Major PPT
76.7
0.6
0.9
66.7
44.1
Minor 5ss
34.5
-1.8
2.8
42.5
44.3
Minor BPS
46.4
-0.2
2.4
62.34
43.4

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026547
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000044614
7549397 - 7649441
100045
ENSAPLT00000025663
7549397 - 7678995
129599