Gene Search

About Basic Search Advanced Search Downloads

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7553431_7554029_R

Intron Information:

Intron Rank:

147242

Intron Class:

major

Intron Phase:

Intron Coordinates:

7553431 - 7554029

Intron Length:

599

Sequence Information:

Terminal Dinucleotides:

GT-AG

5'SS Sequence:

GAG|GTAGGCTTC

5'SS Class:

strong_major

3'SS Sequence:

TAAATTCCTTCAG|G

3'SS Class:

major_PPT

U2 Branch Point Sequence:

TGTTAAA

U12 Branch Point Sequence:

TGTGTGTTAAAT

Flanking Amino Acid:

Intron Amino Acid Position:

Site Scores:

Score

LOD

LOD StDev

Match

Match StDev

Major 5ss

81.1

0.73

73.2

39.3

Major BPS

75.2

0.63

1.1

75.9

36.3

Major PPT

74.6

0.55

0.9

70.8

40.4

Minor 5ss

-0.3

3.1

66.9

44.7

Minor BPS

49.6

0.05

2.2

73.29

43.5

Associated Gene:

Gene:

Ensembl Gene ID:

ENSAPLG00000026547

Chromosome:

Associated Transcripts:

Ensembl Transcript ID

Transcript Coordinates

Transcript Length

ENSAPLT00000025663

7549397 - 7678995

129599

ENSAPLT00000023125

7535088 - 7678995

143908

ENSAPLT00000044614

7549397 - 7649441

100045