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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7554155_7556393_R

Intron Information:

Intron Rank:
147243
Intron Class:
major-like
Intron Phase:
Intron Coordinates:
7554155 - 7556393
Intron Length:
2239

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CGG|GTCCATATG
5'SS Class:
weak_major
3'SS Sequence:
TGGTCTGTTACAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
AATAAAT
U12 Branch Point Sequence:
TGCTGCTGAATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
53.8
0.09
1.4
57.1
47.4
Major BPS
65.7
0.39
1
71.3
30.3
Major PPT
75.2
0.57
1
68.3
42.2
Minor 5ss
32.6
-2
3
33.7
41.7
Minor BPS
52.9
0.09
1.9
64.76
41.9

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026547
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023125
7535088 - 7678995
143908
ENSAPLT00000044614
7549397 - 7649441
100045
ENSAPLT00000025663
7549397 - 7678995
129599