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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7608513_7609484_F

Intron Information:

Intron Rank:
136696
Intron Class:
major
Intron Phase:
Intron Coordinates:
7608513 - 7609484
Intron Length:
972

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAG|GTACAAACA
5'SS Class:
major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73
0.54
1
67.9
37.1
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
32
-2.1
3.1
41.5
44.6
Minor BPS
68.6
0.66
1.3
78.99
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023610
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023527
7607935 - 7609918
1984