About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7609228_7609484_F

Intron Information:

Intron Rank:
136697
Intron Class:
major
Intron Phase:
Intron Coordinates:
7609228 - 7609484
Intron Length:
257

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AGG|GTGGGTGTA
5'SS Class:
major
3'SS Sequence:
TTGCATTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
TAATTTTTAAAT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
73.6
0.56
1.1
68.5
38.7
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
83.2
0.75
0.9
80.8
36.5
Minor 5ss
29
-2.4
3.4
30.7
43.3
Minor BPS
68.6
0.66
1.3
78.99
36.6

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000023610
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000034353
7609026 - 7609918
893