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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7663891_7680038_F

Intron Information:

Intron Rank:
130003
Intron Class:
major
Intron Phase:
Intron Coordinates:
7663891 - 7680038
Intron Length:
16148

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTGGT
5'SS Class:
major
3'SS Sequence:
CACTGCTTTGCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
ACTTAAT
U12 Branch Point Sequence:
TTTCTTTCCACT
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
76.2
0.62
1
70.3
40.5
Major BPS
78.2
0.7
1
77.9
32.1
Major PPT
75.7
0.58
0.9
68.7
36.9
Minor 5ss
36.6
-1.5
3.4
54.8
43.5
Minor BPS
50.4
0.09
2
76.97
39.8

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000019967
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000019983
7663560 - 7680912
17353