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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7665827_7678807_R

Intron Information:

Intron Rank:
147246
Intron Class:
major
Intron Phase:
Intron Coordinates:
7665827 - 7678807
Intron Length:
12981

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
CAA|GTATGTGAA
5'SS Class:
major
3'SS Sequence:
CCCTTTCTGTCAG|C
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTCTCAC
U12 Branch Point Sequence:
TTTGCATCAAGG
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78
0.66
1
73.1
31.2
Major BPS
85
0.87
0.8
85.6
23
Major PPT
75.9
0.58
0.9
75.9
32.7
Minor 5ss
39.8
-1.1
3.1
48.3
42.4
Minor BPS
46.9
-0.3
2.2
60.74
46.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026547
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023543
7665179 - 7679979
14801