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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_7678996_7679271_R

Intron Information:

Intron Rank:
147247
Intron Class:
major
Intron Phase:
Intron Coordinates:
7678996 - 7679271
Intron Length:
276

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGCTTT
5'SS Class:
major
3'SS Sequence:
TGTTTCTTTATAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
AGCTAAT
U12 Branch Point Sequence:
TGTTTCTTTATA
Flanking Amino Acid:
Intron Amino Acid Position:

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
78.5
0.67
1
74.8
38.1
Major BPS
70.5
0.51
1.1
69.7
35.5
Major PPT
85.3
0.79
0.7
80.6
31.5
Minor 5ss
43.9
-0.7
3.1
56.2
48
Minor BPS
66.5
0.51
1.6
75.37
35.7

Associated Gene:

Gene:
Ensembl Gene ID:
ENSAPLG00000026547
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000023543
7665179 - 7679979
14801