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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8296655_8303761_F

Intron Information:

Intron Rank:
7
Intron Class:
major
Intron Phase:
1
Intron Coordinates:
8296655 - 8303761
Intron Length:
7107

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCTT
5'SS Class:
strong_major
3'SS Sequence:
CTTTATTCTCCAG|A
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTTAT
U12 Branch Point Sequence:
ATATCTTTATTT
Flanking Amino Acid:
RDTITRITYKNDAYLLQGLN
Intron Amino Acid Position:
212

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
87
0.87
0.9
84.6
33.2
Major BPS
83.9
0.84
1
73.9
41.3
Major PPT
85.3
0.79
0.8
77.2
36.7
Minor 5ss
41.9
-0.9
3.1
59.6
38.8
Minor BPS
66
0.58
1.5
78.98
37.5

Associated Gene:

Gene:
CA10
Ensembl Gene ID:
ENSAPLG00000003762
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000017211
8107861 - 8306530
198670
ENSAPLT00000003854
8107861 - 8307451
199591