About Basic Search Advanced Search Downloads

© 2019-2022 Kanadia Lab,
PNB, Uconn

Construction by: Audrey Weber

Contact Us

Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8381590_8382365_R

Intron Information:

Intron Rank:
12
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8381590 - 8382365
Intron Length:
776

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TAG|GTATGTACT
5'SS Class:
strong_major
3'SS Sequence:
TTTTTTTTTTCAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TTTTAAA
U12 Branch Point Sequence:
CCTGTCTCAACT
Flanking Amino Acid:
ANNKGKALLYRLKHYSDF*
Intron Amino Acid Position:
517

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
89.9
0.94
0.8
86.2
29.3
Major BPS
90.4
1
0.7
90.2
19.3
Major PPT
100
1.12
0.4
100
0
Minor 5ss
44.5
-0.6
2.5
60.9
43.5
Minor BPS
57
0.3
1.7
71.07
46.1

Associated Gene:

Gene:
UTP18
Ensembl Gene ID:
ENSAPLG00000003482
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000003599
8381533 - 8389943
8411