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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8383286_8384949_R

Intron Information:

Intron Rank:
10
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8383286 - 8384949
Intron Length:
1664

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
TGG|GTGAGTAAC
5'SS Class:
strong_major
3'SS Sequence:
TTTCTCTTTTTAG|T
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TATTTAT
U12 Branch Point Sequence:
TCTTTGTTAATT
Flanking Amino Acid:
VSKNNQYVACGSVSGVVNLY
Intron Amino Acid Position:
411

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
83.4
0.79
0.9
77.5
32.9
Major BPS
88.7
0.96
0.8
78
36.5
Major PPT
89.5
0.89
0.6
89
20.1
Minor 5ss
30.1
-2.3
2.6
28.4
36
Minor BPS
64.7
0.54
2
82.74
39.5

Associated Gene:

Gene:
UTP18
Ensembl Gene ID:
ENSAPLG00000003482
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037649
8380964 - 8389943
8980
ENSAPLT00000003599
8381533 - 8389943
8411