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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8388644_8389292_R

Intron Information:

Intron Rank:
3
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8388644 - 8389292
Intron Length:
649

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
ACA|GTAAGTATC
5'SS Class:
major
3'SS Sequence:
ATTATCTTGCTAG|G
3'SS Class:
major_PPT
U2 Branch Point Sequence:
TTTTCAT
U12 Branch Point Sequence:
TCACCATTATCT
Flanking Amino Acid:
KKKLKIRLEEQFQRAMGGVP
Intron Amino Acid Position:
150

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
79
0.68
1
79.3
34.5
Major BPS
100
1.24
0.5
100
0
Major PPT
68.9
0.43
1
62.9
43.5
Minor 5ss
42.5
-0.8
2.8
60.5
37.7
Minor BPS
52.7
0.16
1.9
71.82
44.4

Associated Gene:

Gene:
UTP18
Ensembl Gene ID:
ENSAPLG00000003482
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037649
8380964 - 8389943
8980
ENSAPLT00000003599
8381533 - 8389943
8411