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PNB, Uconn

Construction by: Audrey Weber

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Gene Search

Intron Name: Anas_platyrhynchos_platyrhynchos_19_8389389_8389472_R

Intron Information:

Intron Rank:
2
Intron Class:
major
Intron Phase:
2
Intron Coordinates:
8389389 - 8389472
Intron Length:
84

Sequence Information:

Terminal Dinucleotides:
GT-AG
5'SS Sequence:
AAA|GTAAGTCCA
5'SS Class:
strong_major
3'SS Sequence:
TTTTGTTCTCTAG|G
3'SS Class:
strong_PPT
U2 Branch Point Sequence:
TCTTCAT
U12 Branch Point Sequence:
TGATCTTCATGT
Flanking Amino Acid:
WVDEDDEAEEKVDMTHRYRR
Intron Amino Acid Position:
118

Site Scores:

Score
LOD
LOD StDev
Match
Match StDev
Major 5ss
84.2
0.81
0.9
74.4
36
Major BPS
87.4
0.93
0.9
87.9
29.5
Major PPT
84.7
0.78
0.7
77.9
36.6
Minor 5ss
36.2
-1.6
2.9
43
37.7
Minor BPS
46.6
-0.1
2
65.72
44.7

Associated Gene:

Gene:
UTP18
Ensembl Gene ID:
ENSAPLG00000003482
Chromosome:
19

Associated Transcripts:

Ensembl Transcript ID
Transcript Coordinates
Transcript Length
ENSAPLT00000037649
8380964 - 8389943
8980
ENSAPLT00000003599
8381533 - 8389943
8411